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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
131
ChIP-seq
10
RRBS
7
DNase-seq
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
159
DNA accessibility
131
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
104
histone
104
histone modification
54
narrow histone mark
50
broad histone mark
21
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
59
August, 2017
June, 2019
46
September, 2018
32
October, 2019
18
May, 2021
13
July, 2019
12
February, 2023
9
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
2
February, 2021
2
November, 2020
1
March, 2020
Available data
218
bam
185
bigWig
134
bed narrowPeak
118
fastq
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
16
tagAlign
12
tsv
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
308
Homo sapiens
Biosample type
1184
tissue
511
cell line
308
primary cell
207
in vitro differentiated cells
8
stem cell
Organ
124
epithelium
92
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
7
liver
6
connective tissue
1
eye
1
heart
1
musculature of body
Project
308
AMP
Genome assembly (visualization)
214
hg19
142
GRCh38
Lab
308
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
17
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
308 results
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ATAC-seq
ChIP-seq
RRBS
DNase-seq
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
pancreatic beta cell
7
13
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