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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ATAC-seq
127
ChIP-seq
56
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
7
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
251
DNA accessibility
127
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
narrow histone mark
48
broad histone mark
21
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
205
bam
195
bigWig
161
fastq
121
bed narrowPeak
101
zippedFastqFolder
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
18
tsv
16
tagAlign
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
446
Homo sapiens
Biosample type
1386
tissue
530
cell line
446
primary cell
208
in vitro differentiated cells
8
stem cell
Organ
223
epithelium
191
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
7
liver
6
connective tissue
1
eye
1
heart
1
musculature of body
Project
290
AMP
147
HPAP
8
T1D
1
ITG
Genome assembly (visualization)
204
hg19
140
GRCh38
Lab
290
AMP-T2D consortium
147
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
May, 2021
BIOSAMPLE
ASSAY
446 results
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ATAC-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
31
1
pancreatic beta cell
23
13
16
1
Langerhans cell
48
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
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