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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
161
ATAC-seq
35
snATAC-seq
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
6
WGBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
248
DNA binding
204
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
May, 2022
100
May, 2020
59
August, 2017
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
312
bigWig
302
bam
248
bed narrowPeak
161
fastq
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
18
tsv
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
496
Homo sapiens
Biosample type
1348
tissue
547
cell line
496
primary cell
256
in vitro differentiated cells
8
stem cell
Organ
143
epithelium
111
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
7
connective tissue
7
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
341
AMP
108
T1D
46
HPAP
1
ITG
Genome assembly (visualization)
334
hg19
237
GRCh38
Lab
308
AMP-T2D consortium
141
Kyle Gaulton, UCSD
46
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
audit script error
18
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
May, 2022
BIOSAMPLE
ASSAY
496 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
DNase-seq
WGBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic alpha cell
13
13
1
6
Langerhans cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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