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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
4
August, 2021
2
July, 2019
June, 2019
1
October, 2019
Available data
5
bam
4
bed bed3+
4
bed narrowPeak
4
bigWig
4
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
7
Homo sapiens
Biosample type
387
cell line
187
tissue
15
in vitro differentiated cells
7
primary cell
Organ
223
epithelium
191
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
7
connective tissue
7
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
7
AMP
Genome assembly (visualization)
6
hg19
4
GRCh38
Lab
7
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
7 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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