Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
4
ATAC-seq
3
Hi-C
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
201
bam
180
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
21
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
232
Homo sapiens
Biosample type
219
tissue
13
primary cell
Organ
596
liver
463
pancreas
303
epithelium
232
brain
192
heart
185
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
175
GRCh38
132
hg19
Lab
232
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
month_released!
June, 2019
organ_slims!
skeleton
BIOSAMPLE
ASSAY
232 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Hi-C
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
2
1
layer of hippocampus
23
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 68 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
See all biosamples
Download