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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
44
fastq
43
bam
26
bigWig
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
1
tsv
Organism
88
Homo sapiens
Biosample type
88
tissue
1
in vitro differentiated cells
Organ
596
liver
463
pancreas
303
epithelium
232
brain
192
heart
185
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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