Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
29
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
21
bigWig
19
bed narrowPeak
15
tagAlign
13
bed broadPeak
8
bam
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
tsv
1
txt
Organism
44
Homo sapiens
Biosample type
43
tissue
1
primary cell
Organ
596
liver
463
pancreas
303
epithelium
232
brain
192
heart
185
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
26
hg19
6
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle cell
1
Download