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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
Transcription
73
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
44
bam
44
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
88
Homo sapiens
Biosample type
88
tissue
1
in vitro differentiated cells
Organ
596
liver
458
pancreas
319
epithelium
260
brain
227
kidney
201
connective tissue
182
heart
166
vasculature
160
blood vessel
115
limb
97
bone element
89
adipose tissue
84
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
24
spleen
23
embryo
21
vein
18
ureter
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
89
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
month_released!
March, 2020
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
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in vitro differentiated cells
white fat cell
1
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