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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
793
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
793
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
563
histone modification
562
histone
298
narrow histone mark
264
broad histone mark
158
control
74
transcription factor
12
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
910
bam
899
bed narrowPeak
770
bigWig
516
bigBed narrowPeak
238
tagAlign
216
fastq
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1427
Homo sapiens
Biosample type
1436
tissue
652
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
244
brain
187
liver
184
kidney
164
heart
163
pancreas
120
blood vessel
120
vasculature
115
limb
96
bone element
75
musculature of body
69
artery
67
connective tissue
66
adipose tissue
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1402
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
856
GRCh38
792
hg19
Lab
1273
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
October, 2018
BIOSAMPLE
ASSAY
1436 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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