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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
260
ATAC-seq
178
DNase-seq
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
833
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
598
histone modification
597
histone
313
narrow histone mark
284
broad histone mark
158
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
82
November, 2017
81
February, 2023
80
April, 2019
October, 2018
72
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
February, 2021
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2021
Available data
939
bed narrowPeak
910
bam
810
bigWig
516
bigBed narrowPeak
238
tagAlign
216
fastq
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
24
tsv
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1381
Homo sapiens
Biosample type
1389
tissue
652
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
244
brain
204
heart
187
liver
182
kidney
163
pancreas
120
blood vessel
120
vasculature
115
limb
75
musculature of body
69
artery
66
connective tissue
65
adipose tissue
38
nerve
37
eye
25
spleen
18
ureter
12
bone element
12
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1355
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
896
GRCh38
792
hg19
Lab
1186
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
October, 2018
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
1389 results
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ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
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