Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
Assay category
Transcription
545
DNA binding
335
DNA accessibility
16
DNA methylation
Target of assay
464
histone modification
463
histone
240
narrow histone mark
223
broad histone mark
78
transcription factor
16
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
153
October, 2019
92
May, 2019
69
August, 2017
64
April, 2019
64
August, 2021
57
November, 2017
October, 2018
40
May, 2024
36
December, 2017
35
February, 2023
22
November, 2018
20
November, 2019
19
May, 2020
14
July, 2019
14
October, 2017
11
May, 2023
8
February, 2021
6
January, 2019
3
December, 2018
2
March, 2019
2
March, 2020
2
September, 2017
Available data
838
bed narrowPeak
750
bigWig
741
bam
510
bigBed narrowPeak
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
152
fastq
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
890
Homo sapiens
Biosample type
896
tissue
360
cell line
284
primary cell
138
in vitro differentiated cells
3
stem cell
Organ
194
brain
178
heart
163
kidney
101
blood vessel
101
vasculature
92
limb
86
liver
75
pancreas
62
artery
38
musculature of body
27
nerve
20
adipose tissue
20
connective tissue
18
ureter
16
spleen
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
894
AMP
2
T1D
Genome assembly (visualization)
896
GRCh38
792
hg19
Lab
778
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
October, 2018
BIOSAMPLE
ASSAY
896 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
tissue
kidney
20
13
75
liver
75
2
islet of Langerhans
25
1
22
coronary artery
3
2
36
left cardiac atrium
40
1
+ See 131 more…
See all biosamples
Download