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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
39
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
Assay category
123
DNA binding
Transcription
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
27
June, 2019
21
May, 2019
13
July, 2019
6
October, 2019
5
March, 2020
Available data
173
bed narrowPeak
144
bigWig
119
bam
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
3
tsv
Organism
204
Homo sapiens
Biosample type
204
tissue
14
cell line
9
primary cell
Organ
244
brain
204
heart
187
liver
184
kidney
163
pancreas
120
blood vessel
120
vasculature
115
limb
96
bone element
75
musculature of body
69
artery
67
connective tissue
66
adipose tissue
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
204
AMP
Genome assembly (visualization)
178
GRCh38
100
hg19
Lab
164
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_slims!
Transcription
month_released!
October, 2018
BIOSAMPLE
ASSAY
204 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
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