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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ATAC-seq
28
ChIP-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
Assay category
Transcription
66
DNA accessibility
28
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
35
February, 2023
27
June, 2019
15
April, 2019
13
July, 2019
8
May, 2019
5
March, 2020
5
May, 2024
1
October, 2019
Available data
78
bed narrowPeak
60
bam
49
bigWig
34
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
3
tsv
Organism
109
Homo sapiens
Biosample type
109
tissue
14
cell line
7
primary cell
Organ
164
kidney
120
pancreas
117
liver
109
heart
96
bone element
66
blood vessel
66
limb
66
vasculature
60
brain
50
musculature of body
49
artery
35
eye
34
adipose tissue
34
connective tissue
19
spleen
18
ureter
14
nerve
13
epithelium
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
109
AMP
Genome assembly (visualization)
84
GRCh38
40
hg19
Lab
104
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
assay_slims!
Transcription
month_released!
October, 2018
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
109 results
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ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
coronary artery
36
3
2
heart left ventricle
2
11
3
4
1
1
1
heart
2
18
1
1
heart right ventricle
2
1
2
1
1
right atrium auricular region
1
4
2
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