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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
12
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
29
DNA binding
Transcription
12
DNA accessibility
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
11
narrow histone mark
11
transcription factor
7
broad histone mark
1
RNA binding protein
Date released
281
November, 2017
201
October, 2019
187
August, 2017
187
June, 2019
141
May, 2021
97
May, 2019
77
December, 2017
72
May, 2020
71
November, 2018
65
April, 2019
46
September, 2018
45
August, 2021
45
February, 2023
45
October, 2018
39
May, 2022
39
November, 2019
30
December, 2018
29
February, 2021
26
July, 2019
21
January, 2019
19
March, 2020
16
February, 2018
13
October, 2017
7
September, 2017
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2020
Available data
41
bed narrowPeak
31
bigWig
25
bam
15
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
45
Homo sapiens
Biosample type
26
in vitro differentiated cells
15
cell line
3
primary cell
1
tissue
Organ
18
liver
4
connective tissue
3
epithelium
1
kidney
Project
45
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
25
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
assay_slims!
Transcription
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell
12
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
primary cell
hepatocyte
3
tissue
kidney
1
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