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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ATAC-seq
53
ChIP-seq
33
pCHi-C
10
Hi-C
Assay category
Transcription
104
DNA accessibility
53
DNA binding
10
3D chromatin structure
Target of assay
30
histone
30
histone modification
30
narrow histone mark
23
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
98
bam
79
bigWig
50
tagAlign
33
tsv
30
bed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
200
Homo sapiens
Biosample type
101
primary cell
81
tissue
8
cell line
6
in vitro differentiated cells
4
stem cell
Organ
53
liver
9
pancreas
5
heart
4
epithelium
3
blood vessel
3
musculature of body
3
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
197
AMP
3
T1D
Genome assembly (visualization)
91
hg19
22
GRCh38
Lab
200
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 24 more…
tissue
liver
50
1
1
islet of Langerhans
2
2
psoas muscle
1
2
aorta
1
1
heart left ventricle
1
1
+ See 16 more…
cell line
EndoC_BH1
2
1
HepG2
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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