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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
77
ATAC-seq
41
WGBS
31
ChIP-seq
22
snATAC-seq
Assay category
286
DNA accessibility
Transcription
41
DNA methylation
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
248
bed narrowPeak
236
bam
230
bigWig
210
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
101
zippedFastqFolder
18
fastq
1
txt
Organism
358
Homo sapiens
Biosample type
202
tissue
156
primary cell
Organ
102
pancreas
100
epithelium
81
kidney
44
musculature of body
35
heart
32
limb
30
brain
22
liver
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
257
AMP
101
HPAP
Genome assembly (visualization)
226
hg19
210
GRCh38
Lab
219
AMP-T2D consortium
101
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
358 results
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table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
WGBS
ChIP-seq
snATAC-seq
tissue
liver
20
heart
18
islet of Langerhans
18
muscle of arm
17
kidney
13
+ See 37 more…
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
Langerhans cell
21
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 21 more…
See all biosamples
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