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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
7
WGBS
2
RNA microarray
1
FAIRE-seq
Assay category
70
DNA binding
10
DNA accessibility
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
87
bam
87
fastq
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
tsv
Organism
89
Homo sapiens
Biosample type
61
cell line
28
tissue
Organ
53
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
2
kidney
1
adipose tissue
1
connective tissue
1
epithelium
Project
89
AMP
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
89
AMP-T2D consortium
Audit category:
2
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
RNA microarray
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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