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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ATAC-seq
41
WGBS
22
snATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
101
DNA accessibility
Transcription
41
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
101
zippedFastqFolder
40
bed narrowPeak
21
bigWig
20
bam
18
fastq
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
txt
Organism
152
Homo sapiens
Biosample type
103
primary cell
43
tissue
6
cell line
Organ
108
pancreas
86
epithelium
20
liver
2
connective tissue
1
musculature of body
Project
101
HPAP
51
AMP
Genome assembly (visualization)
41
hg19
2
GRCh38
Lab
101
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
152 results
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ATAC-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
Langerhans cell
21
pancreatic acinar cell
4
osteoblast
1
1
tissue
islet of Langerhans
18
4
liver
20
skeletal muscle tissue
1
cell line
EndoC_BH1
6
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