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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
76
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
117
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
50
histone
50
histone modification
41
control
28
broad histone mark
26
transcription factor
22
narrow histone mark
12
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
151
bed narrowPeak
108
bam
77
bigWig
64
xls
58
fastq
45
bigBed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
212
Homo sapiens
Biosample type
147
tissue
35
in vitro differentiated cells
27
cell line
4
primary cell
Organ
73
kidney
54
pancreas
28
connective tissue
26
liver
24
adipose tissue
6
epithelium
Project
213
AMP
Genome assembly (visualization)
135
GRCh38
90
hg19
Lab
112
AMP-T2D consortium
71
Katalin Susztak, Upenn
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
1
omental fat pad
11
+ See 2 more…
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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