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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
28
DNase-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
83
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
57
April, 2019
33
June, 2019
16
May, 2019
13
July, 2019
6
October, 2019
5
March, 2020
Available data
119
bam
104
bigWig
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
3
tsv
Organism
130
Homo sapiens
Biosample type
121
tissue
9
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
103
GRCh38
100
hg19
Lab
130
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
organ_slims!
artery
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
3
4
2
1
1
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
right atrium auricular region
10
2
1
right cardiac atrium
6
1
1
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primary cell
cardiac fibroblast
5
3
1
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