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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
17
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
Transcription
44
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
280
October, 2019
216
May, 2021
200
June, 2019
197
August, 2017
151
May, 2020
146
February, 2021
140
May, 2022
134
August, 2021
120
May, 2019
101
February, 2023
94
December, 2017
86
November, 2018
80
April, 2019
51
October, 2018
47
March, 2020
46
September, 2018
41
July, 2019
40
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2022
1
March, 2023
Available data
84
txt
33
fastq
25
bam
22
bed narrowPeak
9
tsv
8
tagAlign
5
bigWig
1
bed bed3
1
bed bed3+
Organism
146
Homo sapiens
Biosample type
95
tissue
33
primary cell
18
cell line
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
connective tissue
6
epithelium
6
limb
6
pancreas
3
kidney
2
liver
Project
113
AMP
33
HPAP
Genome assembly (visualization)
23
hg19
22
GRCh38
Lab
113
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
Transcription
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
146 results
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RNA microarray
snATAC-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
6
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
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