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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
12
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
43
DNA binding
18
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
322
August, 2017
277
October, 2019
217
May, 2021
211
June, 2019
152
February, 2021
151
May, 2020
140
May, 2022
120
May, 2019
94
December, 2017
87
November, 2018
84
February, 2023
80
April, 2019
75
August, 2021
74
October, 2018
49
March, 2020
46
September, 2018
42
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
106
bed narrowPeak
xls
34
bam
32
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
74
Homo sapiens
Biosample type
35
in vitro differentiated cells
27
cell line
9
tissue
4
primary cell
Organ
26
liver
9
kidney
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
75
AMP
Genome assembly (visualization)
45
hg19
26
GRCh38
Lab
38
AMP-T2D consortium
26
Bing Ren, UCSD
7
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
organ_slims!
eye
files.file_type!
xls
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
tissue
kidney
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
primary cell
hepatocyte
4
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