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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
46
ATAC-seq
4
DNase-seq
1
GRO-seq
Assay category
Transcription
56
DNA binding
50
DNA accessibility
Target of assay
32
histone
32
histone modification
18
broad histone mark
16
control
14
narrow histone mark
8
transcription factor
1
RNA binding protein
Date released
35
February, 2023
27
October, 2019
14
February, 2021
13
December, 2017
9
February, 2018
5
May, 2019
2
June, 2019
1
January, 2018
1
July, 2019
Available data
88
bed narrowPeak
70
bam
46
bigWig
25
bigBed narrowPeak
23
fastq
7
bed bed3+
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
Organism
107
Homo sapiens
Biosample type
70
tissue
23
in vitro differentiated cells
14
cell line
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
89
GRCh38
54
hg19
1
hg18
Lab
107
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
DNase-seq
GRO-seq
tissue
coronary artery
5
36
2
tibial artery
23
1
2
islet of Langerhans
1
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
cell line
smooth muscle cell of the coronary artery
6
8
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