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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
8
snATAC-seq
7
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
17
DNA accessibility
6
DNA methylation
Date released
8
January, 2021
7
August, 2017
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
9
bigWig
7
bam
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
25
Homo sapiens
Biosample type
16
tissue
8
primary cell
1
cell line
1
in vitro differentiated cells
Organ
249
pancreas
194
epithelium
177
kidney
97
bone element
93
heart
67
vasculature
64
blood vessel
50
connective tissue
49
artery
49
limb
48
musculature of body
46
liver
44
brain
37
eye
18
ureter
17
adipose tissue
12
skeleton
11
lung
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
18
AMP
8
T1D
Genome assembly (visualization)
9
hg19
7
GRCh38
Lab
18
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
26 results
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snATAC-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
3
3
1
omental fat pad
1
2
subcutaneous abdominal adipose tissue
3
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
1
in vitro differentiated cells
white fat cell
1
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