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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
29
ATAC-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
65
DNA binding
41
DNA accessibility
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
27
December, 2018
27
February, 2023
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
7
October, 2019
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
67
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
111
Homo sapiens
Biosample type
61
cell line
37
tissue
13
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
103
AMP
8
T1D
Genome assembly (visualization)
89
hg19
60
GRCh38
Lab
103
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_slims!
Transcription
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
cell line
GM12878
60
1
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
2
1
4
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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