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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
13
ATAC-seq
8
snATAC-seq
Assay category
60
DNA binding
21
DNA accessibility
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2021
8
January, 2021
4
February, 2023
1
January, 2018
Available data
68
bam
62
bed narrowPeak
60
fastq
55
bigWig
54
bigBed narrowPeak
4
bed bed3
Organism
81
Homo sapiens
Biosample type
61
cell line
12
tissue
8
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
73
AMP
8
T1D
Genome assembly (visualization)
67
hg19
62
GRCh38
Lab
73
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_slims!
Transcription
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
ATAC-seq
snATAC-seq
cell line
GM12878
60
1
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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