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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
38
ATAC-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
43
DNA accessibility
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
4
July, 2019
3
June, 2019
2
March, 2020
Available data
100
bed narrowPeak
83
bam
66
bigWig
62
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
120
Homo sapiens
Biosample type
120
tissue
29
primary cell
14
cell line
Organ
244
brain
214
pancreas
187
liver
184
kidney
164
heart
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
101
GRCh38
66
hg19
Lab
120
AMP-T2D consortium
assay_slims!
Transcription
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
2
1
1
ascending aorta
16
1
thoracic aorta
16
1
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