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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
4
ATAC-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
35
DNA accessibility
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
85
October, 2019
28
June, 2019
28
May, 2019
16
October, 2017
5
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
223
bam
201
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
15
fastq
2
hdf5
2
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
244
tissue
8
primary cell
Organ
598
liver
467
pancreas
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
199
GRCh38
142
hg19
Lab
252
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
organ_slims!
epithelium
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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