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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
DNase-seq
1
ChIP-seq
1
Hi-C
Assay category
9
DNA accessibility
1
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
6
June, 2019
2
August, 2017
1
July, 2019
1
November, 2018
1
November, 2020
Available data
119
bam
98
fastq
96
bigWig
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
1
bedpe bed3+
1
hdf5
Organism
11
Homo sapiens
Biosample type
7
primary cell
3
tissue
1
in vitro differentiated cells
Organ
78
kidney
64
liver
50
brain
46
musculature of body
36
limb
30
heart
24
epithelium
22
pancreas
19
vasculature
18
ureter
15
blood vessel
11
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
11
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
11 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
cardiac fibroblast
3
brain pericyte
1
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
2
subcutaneous abdominal adipose tissue
1
in vitro differentiated cells
adipocyte
1
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