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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
47
WGBS
6
MeRIP-seq
3
Hi-C
Assay category
Transcription
49
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
7
August, 2020
6
February, 2021
6
November, 2020
3
October, 2022
3
September, 2020
Available data
80
zippedFastqFolder
16
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
105
Homo sapiens
Biosample type
99
primary cell
6
cell line
Organ
155
pancreas
105
epithelium
84
kidney
42
liver
10
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
99
HPAP
6
AMP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
AMP-T2D consortium
99
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
3
audit script error
assay_slims!
Transcription
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
105 results
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ATAC-seq
WGBS
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
6
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