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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
22
DNA binding
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
28
October, 2019
27
February, 2023
7
June, 2019
1
July, 2019
1
March, 2020
Available data
46
bed narrowPeak
27
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
64
Homo sapiens
Biosample type
37
tissue
27
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
51
hg19
18
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
primary cell
endothelial cell of umbilical vein
17
2
2
1
retinal pigment epithelial cell
3
1
1
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