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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
Transcription
139
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
66
November, 2017
36
August, 2017
24
May, 2020
13
December, 2017
9
August, 2021
3
July, 2019
2
March, 2020
2
November, 2018
1
December, 2018
1
February, 2021
Available data
519
bam
460
bigWig
460
fastq
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
157
Homo sapiens
Biosample type
79
cell line
74
tissue
3
primary cell
1
in vitro differentiated cells
Organ
253
pancreas
172
epithelium
157
liver
128
connective tissue
89
bone element
77
adipose tissue
59
brain
46
kidney
36
heart
36
vasculature
34
blood vessel
27
musculature of body
23
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
26
hg19
2
GRCh38
Lab
149
AMP-T2D consortium
8
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_slims!
Transcription
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
71
1
2
2
2
1
tissue
liver
63
3
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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