Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
22
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
200
DNA binding
Transcription
23
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
108
control
68
histone modification
67
histone
46
narrow histone mark
24
transcription factor
21
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
66
November, 2017
51
May, 2020
48
August, 2017
26
August, 2021
20
May, 2022
13
December, 2017
6
October, 2019
3
July, 2019
2
February, 2021
2
March, 2020
2
November, 2018
1
December, 2018
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
240
Homo sapiens
Biosample type
138
tissue
94
cell line
7
primary cell
1
in vitro differentiated cells
Organ
376
pancreas
247
epithelium
240
liver
175
connective tissue
135
brain
125
kidney
97
bone element
93
heart
86
vasculature
84
blood vessel
80
adipose tissue
58
artery
40
musculature of body
36
eye
31
limb
23
embryo
15
blood
15
bodily fluid
12
nerve
12
skeleton
12
spleen
11
lung
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
240
AMP
Genome assembly (visualization)
109
hg19
43
GRCh38
Lab
198
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_slims!
Transcription
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
240 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
tissue
liver
107
20
3
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
85
1
1
2
2
2
1
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
Download