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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
3
RRBS
2
Hi-C
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
27
DNA binding
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
15
August, 2017
6
May, 2019
2
March, 2020
1
January, 2018
1
July, 2019
1
May, 2022
Available data
61
bigWig
60
bed narrowPeak
47
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
67
Homo sapiens
Biosample type
57
tissue
10
primary cell
Organ
463
liver
252
pancreas
165
epithelium
152
brain
118
heart
117
kidney
114
connective tissue
107
vasculature
101
blood vessel
92
limb
67
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
27
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
67
AMP
Genome assembly (visualization)
67
hg19
47
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
67 results
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DNase-seq
ChIP-seq
RRBS
Hi-C
ATAC-seq
snATAC-seq
tissue
muscle of leg
13
6
muscle of arm
17
skeletal muscle tissue
13
2
1
1
psoas muscle
2
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
1
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