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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
32
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
35
DNA accessibility
32
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
43
June, 2019
26
August, 2017
May, 2019
6
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
56
bigWig
54
bed narrowPeak
46
bed broadPeak
44
bam
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
80
Homo sapiens
Biosample type
68
tissue
12
primary cell
Organ
598
liver
465
pancreas
318
epithelium
234
brain
224
kidney
203
connective tissue
166
heart
119
vasculature
113
blood vessel
108
limb
97
bone element
90
adipose tissue
80
musculature of body
78
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
61
hg19
42
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
month_released!
May, 2019
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
psoas muscle
2
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
1
See all biosamples
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