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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
GRO-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
61
DNA binding
35
DNA accessibility
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
21
narrow histone mark
13
control
3
transcription factor
Date released
43
June, 2019
26
August, 2017
13
December, 2017
9
February, 2018
7
May, 2019
6
July, 2019
3
March, 2020
2
January, 2018
1
May, 2022
Available data
77
bigWig
74
bed narrowPeak
73
bam
47
bigBed narrowPeak
46
bed broadPeak
37
bed bed3+
33
bigBed broadPeak
25
fastq
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
tsv
1
txt
Organism
110
Homo sapiens
Biosample type
75
tissue
23
in vitro differentiated cells
12
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
82
hg19
62
GRCh38
1
hg18
Lab
110
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
GRO-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
See all biosamples
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