Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
90
ATAC-seq
47
WGBS
6
MeRIP-seq
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
Transcription
101
DNA binding
91
DNA accessibility
47
DNA methylation
5
3D chromatin structure
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
24
control
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
80
May, 2022
46
September, 2018
41
August, 2017
20
May, 2021
15
November, 2019
15
October, 2019
7
August, 2020
6
February, 2021
6
November, 2020
5
September, 2017
3
March, 2020
3
October, 2022
3
September, 2020
2
August, 2021
1
February, 2023
Available data
125
bam
115
bigWig
108
fastq
91
bed narrowPeak
80
zippedFastqFolder
29
bigBed narrowPeak
7
tsv
4
bedpe bed3+
4
hic
3
cool
3
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
252
Homo sapiens
Biosample type
tissue
191
primary cell
59
cell line
3
in vitro differentiated cells
Organ
411
liver
310
epithelium
253
pancreas
113
connective tissue
69
blood
69
bodily fluid
49
vasculature
45
kidney
43
blood vessel
23
embryo
23
heart
22
vein
18
brain
14
artery
12
musculature of body
5
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
152
AMP
99
HPAP
2
T1D
Genome assembly (visualization)
114
GRCh38
110
hg19
Lab
148
AMP-T2D consortium
99
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
43
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
biosample_type!
tissue
BIOSAMPLE
ASSAY
253 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
MeRIP-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
primary cell
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
pancreatic endocrine cell
23
pancreatic acinar cell
8
9
1
pancreatic ductal cell
13
4
cell line
EndoC_BH1
15
19
6
1
2
1
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
Download