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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
RRBS
3
pCHi-C
Assay category
Transcription
77
DNA accessibility
11
DNA methylation
3
3D chromatin structure
Date released
35
February, 2023
30
June, 2019
15
July, 2019
8
February, 2021
5
March, 2020
1
October, 2019
Available data
77
bed narrowPeak
48
bam
40
bigWig
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
9
bed bedMethyl
9
bigBed bedMethyl
3
bedpe bed3+
3
hic
3
tsv
Organism
94
Homo sapiens
Biosample type
82
tissue
8
cell line
4
primary cell
Organ
249
pancreas
194
epithelium
177
kidney
97
bone element
93
heart
67
vasculature
64
blood vessel
50
connective tissue
49
artery
49
limb
48
musculature of body
46
liver
44
brain
37
eye
18
ureter
17
adipose tissue
12
skeleton
11
lung
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
83
GRCh38
45
hg19
Lab
94
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
Transcription
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
94 results
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ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
pCHi-C
tissue
coronary artery
36
2
heart
18
1
1
heart left ventricle
2
3
4
1
1
1
heart right ventricle
1
2
1
1
right atrium auricular region
1
2
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
primary cell
cardiac fibroblast
3
1
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