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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
129
DNA binding
74
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
27
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
5
March, 2020
Available data
185
bed narrowPeak
148
bigWig
133
bam
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
219
Homo sapiens
Biosample type
205
tissue
14
cell line
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
219
AMP
Genome assembly (visualization)
190
GRCh38
113
hg19
Lab
179
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_slims!
Transcription
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
8
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