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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
20
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
24
bam
24
fastq
16
bigWig
14
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
26
Homo sapiens
Biosample type
26
tissue
Organ
244
brain
214
pancreas
204
heart
187
liver
184
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
16
GRCh38
14
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
WGBS
pCHi-C
ATAC-seq
DNase-seq
tissue
spleen
20
2
1
1
1
gastric (mucosa of stomach)
1
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