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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
ChIP-seq
6
pCHi-C
5
DNase-seq
2
WGBS
1
RRBS
Assay category
34
DNA accessibility
25
DNA binding
Transcription
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
27
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
7
October, 2019
2
March, 2020
1
July, 2019
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
19
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
Organism
68
Homo sapiens
Biosample type
63
tissue
5
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
48
hg19
22
GRCh38
Lab
68
AMP-T2D consortium
assay_slims!
Transcription
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
WGBS
RRBS
tissue
spleen
1
20
1
1
2
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
sigmoid colon
1
primary cell
retinal pigment epithelial cell
3
1
1
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