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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
50
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
55
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
48
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
249
bam
228
bigWig
221
bed narrowPeak
145
bigBed narrowPeak
118
tagAlign
65
bed broadPeak
56
bigBed broadPeak
53
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
262
tissue
18
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
223
GRCh38
170
hg19
Lab
280
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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