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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
48
DNase-seq
47
ATAC-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
95
DNA accessibility
94
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
57
April, 2019
53
June, 2019
35
February, 2023
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
5
March, 2020
Available data
169
bed narrowPeak
159
bam
132
bigWig
112
bigBed narrowPeak
48
bed bed3+
48
bed broadPeak
48
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
205
Homo sapiens
Biosample type
182
tissue
14
cell line
9
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
205
AMP
Genome assembly (visualization)
174
GRCh38
136
hg19
Lab
205
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
205 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
3
2
4
1
1
1
coronary artery
5
2
36
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
right atrium auricular region
10
2
1
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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