Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
465
DNA binding
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
308
November, 2017
61
November, 2018
28
December, 2018
25
August, 2021
23
October, 2019
18
February, 2021
17
January, 2019
16
May, 2021
11
November, 2019
6
February, 2023
6
March, 2020
6
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
461
bam
414
fastq
399
bigWig
386
bed narrowPeak
345
bigBed narrowPeak
53
bed broadPeak
53
bigBed broadPeak
15
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
526
Homo sapiens
Biosample type
1201
tissue
537
primary cell
528
cell line
201
in vitro differentiated cells
7
stem cell
Organ
378
liver
60
blood
60
bodily fluid
50
pancreas
39
epithelium
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
523
AMP
5
T1D
Genome assembly (visualization)
407
hg19
344
GRCh38
Lab
494
AMP-T2D consortium
23
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
50
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
528 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
369
1
2
2
2
1
1
GM12878
59
1
EndoC_BH1
9
19
6
1
3
2
2
1
smooth muscle cell of the coronary artery
6
8
Panc1
10
1
1
+ See 11 more…
See all biosamples
Download