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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
7
DNase-seq
4
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
Assay category
79
DNA binding
26
DNA accessibility
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
9
February, 2023
6
February, 2021
4
August, 2021
2
July, 2019
2
November, 2020
2
October, 2019
1
August, 2018
1
March, 2020
1
May, 2021
Available data
75
bam
69
bigWig
62
bed narrowPeak
55
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
tsv
Organism
113
Homo sapiens
Biosample type
tissue
88
in vitro differentiated cells
24
primary cell
1
stem cell
Organ
409
liver
310
epithelium
253
pancreas
113
connective tissue
69
blood
69
bodily fluid
49
vasculature
45
kidney
43
blood vessel
23
embryo
23
heart
22
vein
18
brain
14
artery
12
musculature of body
5
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
112
AMP
1
T1D
Genome assembly (visualization)
87
hg19
66
GRCh38
Lab
108
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
Transcription
target.investigated_as!
other post-translational modification
biosample_type!
tissue
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
Capture-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
67
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
+ See 1 more…
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
osteoblast
2
1
1
brain pericyte
1
1
adult endothelial progenitor cell
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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