Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
4
Hi-C
3
ChIP-seq
1
pCHi-C
Assay category
27
DNA accessibility
4
3D chromatin structure
3
DNA binding
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
24
June, 2019
4
July, 2019
3
August, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
359
bigWig
357
bam
295
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
35
Homo sapiens
Biosample type
205
tissue
35
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
21
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
6
liver
3
heart
2
vein
1
eye
1
musculature of body
Project
35
AMP
Genome assembly (visualization)
30
GRCh38
28
hg19
Lab
35
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
35 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Hi-C
ChIP-seq
pCHi-C
primary cell
hepatocyte
1
3
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 18 more…
See all biosamples
Download