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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
DNA binding
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
8
August, 2021
2
March, 2019
Available data
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
10
Homo sapiens
Biosample type
7
cell line
3
tissue
Organ
4
liver
3
pancreas
2
kidney
Project
10
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
777
AMP-T2D consortium
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
74
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
DNA binding
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
10 results
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STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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