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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
18
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
97
August, 2021
11
May, 2023
2
March, 2019
Available data
78
bed narrowPeak
64
xls
14
bigWig
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
110
Homo sapiens
Biosample type
85
tissue
25
cell line
Organ
84
kidney
22
liver
3
pancreas
Project
110
AMP
Genome assembly (visualization)
76
GRCh38
18
hg19
Lab
2431
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
110 results
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ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
6
1
islet of Langerhans
1
2
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
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