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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
ATAC-seq
186
DNase-seq
27
Hi-C
5
FAIRE-seq
1
snATAC-seq
Assay category
1403
Transcription
1305
DNA binding
453
DNA accessibility
27
3D chromatin structure
19
DNA methylation
Date released
164
June, 2019
45
February, 2023
45
May, 2020
39
May, 2022
28
November, 2019
23
October, 2019
22
February, 2021
18
May, 2021
14
August, 2021
14
March, 2020
14
September, 2018
11
July, 2019
10
August, 2017
10
November, 2018
7
October, 2017
5
September, 2017
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2020
Available data
370
bed narrowPeak
363
bam
320
bigWig
218
bigBed narrowPeak
191
bed bed3+
184
bed broadPeak
183
bigBed broadPeak
63
fastq
22
hic
19
bedpe bed3+
12
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
tsv
1
bedpe
1
tar
Organism
480
Homo sapiens
Biosample type
299
tissue
116
primary cell
47
in vitro differentiated cells
18
cell line
Organ
87
pancreas
74
kidney
58
epithelium
44
limb
42
heart
37
musculature of body
34
connective tissue
31
eye
31
liver
27
brain
27
vasculature
25
blood vessel
18
ureter
14
artery
12
bone element
12
skeleton
8
adipose tissue
5
vein
3
nerve
2
spleen
1
blood
1
bodily fluid
Project
477
AMP
3
HPAP
Genome assembly (visualization)
480
hg19
443
GRCh38
Lab
423
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
29
inconsistent ontology term
5
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
480 results
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Clear Filters
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
42
1
2
1
liver
20
2
1
retina
15
3
heart
16
1
muscle of arm
17
+ See 49 more…
primary cell
monocyte
15
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
pancreatic acinar cell
5
1
endothelial cell of umbilical vein
2
2
1
+ See 46 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
1
HepG2
1
1
Panc1
1
1
GM12878
1
+ See 1 more…
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