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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
Assay category
907
DNA binding
553
Transcription
318
DNA accessibility
57
DNA methylation
13
3D chromatin structure
1
DNA sequencing
Date released
4
July, 2019
3
October, 2022
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2020
1
March, 2023
Available data
7
hic
5
bed bed3+
5
bedpe bed3+
5
bigWig
5
hdf5
3
cool
1
fastq
Organism
13
Homo sapiens
Biosample type
tissue
10
primary cell
3
cell line
Organ
7
epithelium
4
blood vessel
4
pancreas
4
vasculature
3
brain
3
liver
2
vein
1
connective tissue
Project
9
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
11
hg19
2
GRCh38
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
tissue
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
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cell line
HepG2
2
Panc1
1
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